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Recent Papers By OGIC Members


  • McCann,J.A., Muro,E.M., Palmer, C.,Palidwor,G., Porter,C.J., Andrade,M.A., Rudnicki,M.A. "ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation" BMC Genomics 2007,8:322doi:10.1186/1471-2164-8-32. Published 14 September 2007 (PDF)
  •  Campbell P.A., Perez-Iratxeta, C., Andrade, M.A., and Rudnicki, M.A. (2007). Oct4 targets regulatory nodes to modulate stem cell function. PLoS One (in press)
  • Hailesellasse Sene, K., C.J. Porter, G. Palidwor, C. Perez-Iratxeta, E.M. Muro, P.A. Campbell, M.A. Rudnicki, M.A. Andrade-Navarro. 2006. “Gene function in early mouse embryonic stem cell differentiation.” BMC Genomics 2007, 8:85. Published   29 March 2007


  • Puente LG, Voisin S, Lee RE, Megeney LA. Reconstructing the regulatory kinase pathways of myogenesis from phosphopeptide data. Mol Cell Proteomics. 2006 Sep 13 [ Pubmed]
  • Puente LG, Borris DJ, CarriereJF, Kelly JF, Megeney LA. Identification of canidate regulators of embryonic stem cell differentiation by comparative phosphoprotein affinity profiling. Mol Cell Proteomics. 2006 Jan;5(1) 57-67 Epub 2005 Sep 26. [PubMed]

    Bonnet, S., E.D. Michelakis, C.J. Porter, M.A. Andrade-Navarro, B. Thébaud, S. Bonnet, A. Haromy, G. Harry, R. Moudgil, M.S. McMurtry, E.K. Weir, and S.L. Archer. 2006. An abnormal mitochondrial-HIF-1alpha-Kv channel pathway disrupts oxygen-sensing and triggers pulmonary arterial hypertension (PAH) in fawn-hooded rats: similarities to human PAH. Circulation. In press.

    Muro, E.M., C. Perez-Iratxeta, and M.A. Andrade-Navarro. 2006. Amplification of the Gene Ontology annotation of Affymetrix probe sets. BMC Bioinformatics. 7, 159. [PubMed]

    Palidwor, G., E.G. Reynaud, and M.A. Andrade-Navarro. 2006. Taxonomic colouring of phylogenetic trees of protein sequences. BMC Bioinformatics. 7, 79. [PubMed]


  • Fernando, P.S., Deng, W., De Repentigny, Y., Kothary, R., Kelly, J.F., and Megeney, L.A. (2005). Active kinase proteome screening reveals novel signal complexity in cardiomyopathy.  Mol. Cell. Proteomics4, 673-682

  • Baldwin, R.M., M. Garratt-Lalonde, D.A.E. Parolin, P.M. Krzyzanowski, M.A. Andrade, and I.A.J. Lorimer. Protection of glioblastoma cells from cisplatin cytotoxicity via protein kinase C-iota-mediated attenuation of P38 MAP Kinase signaling. Oncogene. In Press. [PubMed]

  • Kendal WS, Suomela BP. Large-scale genomic correlations in Arabidopsis thaliana relate to chromosomal structure. BMC Genomics. 2005 Jun 2;6(1):82 [PubMed]
  • Korbel, J.O., T. Doerks, L.J. Jensen, C. Perez-Iratxeta, S. Kaczanowski, S.D. Hooper, M.A. Andrade and P. Bork. 2005. Systematic association of genes to phenotypes by genome and literature mining. PLoS Biology 3(5):e134. [PubMed]
  • Perez-Iratxeta, C. and M.A. Andrade. 2005. Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. BMC Bioinformatics. 6, 183 [PubMed]

  • Perez-Iratxeta, C., M. Wjst, P. Bork and M.A. Andrade. 2005. G2D: A Tool for Mining Genes Associated to Disease. BMC Genetics. 6, 45 [PubMed]

  • Perez-Iratxeta, C., G. Palidwor, C.J. Porter, N.A. Sanche, M.R. Huska, B.P. Suomela, E.M. Muro, P.M. Krzyzanowski, E. Hughes, P.A. Campbell, M.A. Rudnicki and M.A. Andrade. 2005. Study of stem cell function using microarray experiments. FEBS Letters. 579, 1795-180 [PubMed]
  • Reynaud, E.G., M.A. Andrade, F. Bonneau, T.B. Ly, M. Knop, K. Scheffzek and R. Pepperkok. The human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalisation. BMC Biology. 21, 3. [PubMed]
  • Savchenko, A., N. Krogan, J.R. Cort, E. Evdokimova, J.M. Lew, A.A. Yee, L. Sánchez-Pulido, M.A. Andrade, A. Bochkarev, J.D. Watson, M.A. Kennedy, J. Greenblatt, T. Hughes, C.H. Arrowsmith, J.M. Rommens and A.M. Edwards. 2005. The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. Journal of Biological Chemistry. 280:19213-19220 [PubMed]
  • Suomela, B.P. and M.A. Andrade. 2005. Ranking the whole MEDLINE database according to a large training set using text indexing. BMC Bioinformatics. 6, 75 [PubMed]

  • Xia, X. and G. Palidwor. 2005. Genomic Adaptation to Acidic Environment: Evidence from Helicobacter pylori. American Naturalist 166(6) [PubMed]
  • Puente LG, Carriere JF, Kelly JF, Megeney LA. 2004. Comparative analysis of phosphoprotein-enriched myocyte proteomes reveals widespread alterations during differentiation. FEBS 574:138-44 [PubMed]
  • Seale P, Holterman C, Rudnicki MA. 2004.  Muscle satellite cell-specific genes identified by genetic profiling of MyoD-deficient myogenic cell.  Dev Biol.  Nov 15;275(2):287-300. [PubMed]
  • Polesskaya A, Seale P, Rudnicki MA. 2003. Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration. Cell 113:841-852. [PubMed]
  • Hierlihy AM, Seale P, Lobe CG, Rudnicki MA, Megeney LA. 2002. The post-natal heart contains a  myocardial stem cell population. FEBS 530:239-243. [PubMed]


Recent Papers  That  Acknowledge the OGIC

  • Yauk CL, Berndt ML, Williams A, Douglas GR. 2004. Comprehensive comparison of six microarray technologies. Nucleic Acids Research. 32(15): p. e124 [PubMed]

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Last modified 2007-09-20 08:32 AM