Home

Carol Perez-Iratxeta's Page

Carolina Perez Iratxeta
associate scientist    
OHRI box:411 tel: +1-(613)737-8899 ext. 79525
501, Smyth Road fax: +1-(613) 737-8803
K2P 0E6, ON Ottawa email: cperez-iratxeta@ohri.ca
Canada    

 

I work at the OHRI in the group of Miguel Andrade. My research interest is in data mining and computational genomic analysis applied to human disease.



[web servers] [publications] [links]


web servers

  

publications 

    • Perez-Iratxeta, C., Palidwor, G and Andrade-Navarro MA. 2007. Towards completion of the Earth's proteome. EMBO reports, 8, 12, 1135-1141. [PMID: 18059312]
    •  Grenier G, Scimè A, Le Grand F, Asakura A, Perez-Iratxeta, C., Andrade-Navarro MA, Labosky PA, Rudnicki MA. 2007. Resident Endothelial Precursors in Muscle, Adipose and Dermis Contribute to Post-Natal Vasculogenesis. Stem Cells, 25: 3101-3110. [PMID: 17823241]
    • Perez-Iratxeta, C., P. Bork and M.A. Andrade-Navarro. 2007. Update of the G2D tool for prioritization of gene candidates to inherited diseases. Nucleic Acids Research. 35:W212. [PMID: 17478516]
    • Campbell, P.A., Perez-Iratxeta, C., Andrade-Navarro, MA, and Rudnicki, MA. 2007. Oct4 targets regulatory nodes to modulate stem cell function. PLoS ONE. 2:e553. [PMID: 17579724]
    • Hailesellasse Sene, K., C.J. Porter, G. Palidwor, C. Perez-Iratxeta, E.M. Muro, P.A. Campbell, M.A. Rudnicki, M.A. Andrade-Navarro. 2007. Gene function in mouse embryonic stem cell differentiation. BMC Genomics. 8:85. [PMID: 17394647]
    • Perez-Iratxeta, C., M.A. Andrade-Navarro and J.D. Wren. 2006. Evolving research trends in bioinformatics. Briefings in Bioinformatics. 8:88-95. [PMID: 17077138]
    • Tiffin, N., E. Adie, F. Turner, H.G. Brunner, M.A. van Driel, M. Oti, N. Lopez-Bigas, C. Ouzounis, C. Perez-Iratxeta, M.A. Andrade-Navarro, A. Adeyemo, M.E. Patti, C. Semple and W. Hide. 2006. Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes. Nucleic Acids Research. 34:3067-3081 [PMID: 16757574]
    • Muro, E.M., C. Perez-Iratxeta, and M.A. Andrade-Navarro. 2006. Amplification of the Gene Ontology annotation of Affymetrix probe sets. BMC Bioinformatics, 7:159. [PMID: 16549014]
    • Perez-Iratxeta, C. & Andrade, M.A. (2005).Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. BMC Bioinformatics, 6, 183. [PMID: 16033654]
    • Perez-Iratxeta, C., Wjst, M., Bork, P. & Andrade, M.A. (2005). G2D: a tool for mining genes associated with disease. BMC Genetics, 6, 45. [PMID: 16115313]
    • Perez-Iratxeta, C., Palidwor, G., Sanche, N. A., Porter, C. J., Muro, E. M., Huska, M. R., Suomela, B., Hughes, E., Campbell, P., Rudnicki, M., & Andrade, M. A. (2005). Study of stem cell function using microarray experiments.FEBS Letters, 579, 1795-1801. [PMID: 15763554]
    • Korbel, J. O., Doerks, T., Jensen, L. J., Perez-Iratxeta, C., , Kaczanowski, S., Hooper, S. D., Andrade, M. A. & Bork P. (2005). Systematic Association of Genes to Phenotypes by Genome and Literature Mining. PLOS Biology. 3,(5). [PMID: 15799710]
    • Perez A. J., Perez-Iratxeta, C., Bork, P., Thode, G. & Andrade, M. A. Gene annotation from scientific literature using mappings between keyword systems. (2004). Bioinformatics. 20, 2084-2091. [PMID: 15059832]
    • Perez-Iratxeta, C., Astola, N., Ciccarelli, F.D., Shah, P. K., Bork, P. & Andrade, M. A. (2003). A protocol for the update of references to scientific literature in biological databases. Applied Bioinformatics, 2, 189-191. [PMID: 15130808]
    • Shah, P. K., Perez-Iratxeta, C., Bork, P. & Andrade, M. A. (2003). Information extraction from full scientific articles. Where are the keywords?. BioMed Central Bioinformatics. 4, 20. [PMID: 12775220]
    • Perez-Iratxeta, C., Perez, A.J., Bork, P. & Andrade, M.A. (2003). Update on XplorMed: a web tool for exploring scientific literature. Nuc Acids Res. 31, 3866-3868. [PMID: 12824439]
    • Netzel, R., Perez-Iratxeta, C., Bork, P. & Andrade, M. A. (2003). The way we write; contry-variation of scientific written English by country. EMBO reports, 4, 446-451. [PMID: 12728240]
    • Andrade, M. A., Ciccarelli, F. D., Perez-Iratxeta, C. & Bork, P. (2002). NEAT: A domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria. Genome Biology, 3. [PMID: 12225586]
    • Perez-Iratxeta, C., Bork, P. & Andrade, M.A. (2002). Exploring MEDLINE abstracts with XplorMed. Drugs of Today, 38, 381-389. [PMID: 12532176]
    • Perez-Iratxeta, C. & Andrade, M.A. (2002). Worldwide evolution of scientific publishing activity. Science, 297 519-519. [PMID: 12143877]
    • Perez-Iratxeta, C., Kerr, H., Bork, P. & Andrade, M. A. (2002). Computing fuzzy associations for the analysis of biological literature. Biotechniques, 32, 1380-1385. [PMID: 12074170]
    • Perez-Iratxeta, C., Bork, P. & Andrade, M. A. (2002). Association of genes to genetically inherited diseases using data mining. Nature Genetics, 31, 316-319. [PMID: 12006977]
    • Perez-Iratxeta, C., Bork, P. & Andrade, M. A. (2001). XplorMed: a tool for exploring MEDLINE abstracts. Trends in Biochem. Sci., 26, 573-575. [PMID: 11551795]
    • Andrade, M.A., Perez-Iratxeta, C. & Ponting, C.P. (2001). Protein repeats: structures, functions and evolution. J. Struct Biol. 84, 445-451. [PMID: 11551174]
    • Perez-Iratxeta, C., Halloy, J., Moran, F., Martiel, J.L. & Goldbeter, A. (1998). Coexistence of multiple propagating wave fronts in a biochemical model: link with birhytmicity and multiple-threshold excitability. Biophysical Chemistry, 74, 197-207. [PMID: 17029746]
    • Nuno, J.C., Sanchez-Valdenebro, I., Perez-Iratxeta, C., Melendez-Hevia, E. & Montero, F. (1997). Network organization of cell metabolism: monosaccharide interconversion. Biochem. J., 324,103-111. [PMID: 9190785]

       

links